DDX11L2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002712
Fusion event
HBV-DDX11L2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
114360956/113603379 (Hg38)
End
114360956/113603379 (Hg38)
Location type
ncRNA_intronic
Fragile sites / regions
FRA2S ; FRA2B
Target gene
DDX11L2
Nearest miRNA
hsa-mir-1285-2/Upstream/20283; hsa-mir-10b/Downstream/117911;
Nearest TSS
ENST00000437798/Upstream/25997; ENST00000476236/Downstream/23850;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/18658, chr2-CpG: 61/Downstream/23633
Upstream sequence
cttaccctaaccctaccctaacccttaaccctaacccctaaccctaacccctaaccctaaccctaccccaaccccaaacccaaccctaacccaaccctaa
Downstream sequence
cccctaaccctaacccctaccctaacccctagccctagccctagccctaaccctaaccctcgccctaaccctcaccctaaccctcaccctcaccctaacc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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