VISDB Viral Integration Site DataBase

VIS ID

TVIS10002724

Fusion event

HBV-CARM1 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr19

Cytoband

p13.2

Reference genome

Start

End

11009663/10898987 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-92a-3p ; hsa-let-7e-5p ; hsa-mir-15a-5p ; hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-181c-5p ; hsa-mir-181d-5p ; hsa-mir-149-3p ; hsa-mir-1207-5p ; hsa-mir-1909-3p ; hsa-mir-4728-5p ; hsa-mir-4763-3p ; hsa-mir-6722-3p ; hsa-mir-6785-5p ; hsa-mir-6883-5p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-1249-5p ; hsa-mir-3688-3p ; hsa-mir-5093 ; hsa-mir-6721-5p ; hsa-mir-6757-5p ; hsa-mir-6797-5p ; hsa-mir-7112-5p ; hsa-mir-223-3p ; hsa-mir-1245b-5p ; hsa-mir-1296-3p ; hsa-mir-184 ; hsa-mir-194-3p ; hsa-mir-3142 ; hsa-mir-4297 ; hsa-mir-5581-5p ; hsa-mir-6734-3p ; hsa-mir-6742-5p ; hsa-mir-128-1-5p ; hsa-mir-128-2-5p ; hsa-mir-15b-5p ; hsa-mir-16-5p ; hsa-mir-1827 ; hsa-mir-195-5p ; hsa-mir-3131 ; hsa-mir-424-5p ; hsa-mir-4283 ; hsa-mir-4436a ; hsa-mir-451b ; hsa-mir-4700-3p ; hsa-mir-497-5p ; hsa-mir-5000-3p ; hsa-mir-542-5p ; hsa-mir-611 ; hsa-mir-6777-5p ; hsa-mir-6808-5p ; hsa-mir-6838-5p ; hsa-mir-6877-5p ; hsa-mir-6889-5p ; hsa-mir-6893-5p ; hsa-mir-940

Nearest miRNA

hsa-mir-1181/Upstream/69952; hsa-let-7e/Downstream/214487;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/26397, chr19-CpG: 47/Downstream/22270

Upstream sequence

GCCTGGGGCCTGGCCCATGTAGGGACTAGAGGGTTGAGTGTGTCCATGGGGAGGGGCCAAGACGGGGAGAGCCATGAGGAATGATGGGCACAGAGCTCAG

Downstream sequence

AGGCTCGGGAGTCTCCTGAACAAAGAGAGGAACACGGCTTAGCTTGttttttttttttttttttttGGTTTGTCAGTATTTCCCAGGTGTCTTCTGTGTG