JAKMIP1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002734
Fusion event
HBV-JAKMIP1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr4
Cytoband
p16.1
Reference genome
GRCh37/hg19
Start
6107760/6106033 (Hg38)
End
6107760/6106033 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA4A
Target gene
JAKMIP1
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-378d-1/Upstream/182705; hsa-mir-12113/Downstream/1204417;
Nearest TSS
ENST00000502981/Upstream/35838; ENST00000507424/Downstream/44475;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/123, chr4-CpG: 18/Downstream/6737
Upstream sequence
cattccattccattccattccattgaattccattccattccattccactcgggttgattccatgccattccattccattccattccattccattccattc
Downstream sequence
CAGCTGGGGGAGCTGGCCACAGCCTCCCCACGCCCAAGACACCCACCTGGGCCCACGTTCCCATGGATTCCCCCTTCGGCAGTGCCCTGCAGGCCTGACC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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