Basic Information
VIS ID
TVIS10002743
Fusion event
HBV-LOC105372926 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
q41
Reference genome
GRCh37/hg19
Start
220021773/219848431 (Hg38)
End
220021773/219848431 (Hg38)
Location type
Intronic
Target gene
LOC105372926
Nearest miRNA
hsa-mir-101-1/Upstream/7770746; hsa-mir-1182/Downstream/269422;
Nearest TSS
ENST00000473358/Upstream/235286; ENST00000490891/Downstream/70599;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/235211, chr1-CpG: 116/Downstream/79359
Nearby gene
LYPLAL1(-635566) ; RNU5F-1(+24846) ;
Upstream sequence
agaaatttgggattatattaaatggtcaaagctaataattggtgttcctaaggaaaaagagaaatctaaaagtttgggaaaatttttgagggaataattg
Downstream sequence
aggaaaacttccccagccttgctaggacctagacatccaaatacaagaagctcaaagaacacctgggaaattcattgcaaaaagatcatcagctaggcac
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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