Basic Information
VIS ID
TVIS10002746
Fusion event
HBV-LINC01605 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
p11.23
Reference genome
GRCh37/hg19
Start
37290809/37433291 (Hg38)
End
37290809/37433291 (Hg38)
Location type
Intronic
Target gene
LINC01605
Nearest miRNA
hsa-mir-124-1/Upstream/7475943; hsa-mir-10400/Downstream/3837757;
Nearest TSS
ENST00000518652/Upstream/26567; ENST00000517897/Downstream/46798;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/2196698, chr8-CpG: 351/Downstream/261135
Nearby gene
KCNU1(-497166) ; ZNF703(+262492) ;
Upstream sequence
CAAATTGAAAAATGTGTTCAAGAAATCATTGACCAGTCAGATGTCACAACTAGTGAATACGAAAAGGAAAAAGTGAGTGGAGAAACTTTCAGATGGAGTA
Downstream sequence
TAAAGTATAAGAAAAATTTTTAAATTTCCTGCCAAAAAAAAAAACTAACCAGGGCAAAATGGGAAACATCTAACATTTCgggcttggactcctgttctgc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate