Basic Information
VIS ID
TVIS10002758
Fusion event
HBV-chr14 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr14
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
35113453/34644247 (Hg38)
End
35113453/34644247 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-208a/Upstream/3629505; hsa-mir-1185-1/Downstream/2308062;
Nearest TSS
ENST00000550708/Upstream/14064; ENST00000557373/Downstream/69581;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/13975, chr14-CpG: 76/Downstream/69932
Nearby gene
SNX6(-14087) ; CFL2(+66135) ;
Upstream sequence
ccgaggtgggcgaatcatgaggtcaggagtttcagaccagcctgggcaacatgatgaaaccccgtctctactaaaaatacaaaaaattagctgggcacag
Downstream sequence
tggcaggtgcctgtaatcccagctactcgggaggctgaggcaggagaatctcttgaacctgggagacagaggctgcagtaagccgagatcagcgccactg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate