Basic Information
VIS ID
TVIS10002763
Fusion event
HBV-LOC101928570 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr6
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
77878289/77168572 (Hg38)
End
77878289/77168572 (Hg38)
Location type
Intronic
Target gene
LOC101928570
Nearest miRNA
hsa-mir-10398/Upstream/1740099; hsa-mir-10524/Downstream/1370691;
Nearest TSS
ENST00000381078/Upstream/393589; ENST00000602452/Downstream/295201;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/1419022, chr6-CpG: 132/Downstream/293942
Nearby gene
IMPG1(-1095894) ; HTR1B(+293659) ;
Upstream sequence
TCTGCTTTATATAAAGAACAGAAAAGAAGAAGCATAGCTGCATAATCTTTTTGTAAATGTGAACCTACTTGCTTGCTCACACTTCTGCTGGGTCAGTGCT
Downstream sequence
tgttaattgttgtctagttgctgtgtagattcattgtttttttttctctttttgtcttttagtttgcttgaattctgtcatattggtgtttgatttcttt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate