Basic Information
VIS ID
TVIS10002771
Fusion event
HBV-chr3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
p21.31
Reference genome
GRCh37/hg19
Start
48781358/48743925 (Hg38)
End
48781358/48743925 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-12127/Upstream/99645; hsa-let-7g/Downstream/276223;
Nearest TSS
ENST00000440867/Upstream/3572; ENST00000435419/Downstream/8393;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/26454, chr3-CpG: 104/Downstream/103145
Nearby gene
IP6K2(-26647) ; PRKAR2A(+6735) ;
Upstream sequence
GTTGATTGAATTTTTACTTTCTGAATCTGTTACTTTGATACTTATTCTAGACATTAAATATATTTTGTTGATTGAATTTTTGCACACTGAGAAAATACAA
Downstream sequence
TCCCTCTTCAAGGCTGAGACTACGGATGATATGATCTTGACATTGTCCTGGAATGTCTTATGTCATAGCAGTACTACCACGAAAACAAAACCACAAtttt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate