HMG20B _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002777
Fusion event
HBV-HMG20B integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
3567642/3567644 (Hg38)
End
3567642/3567644 (Hg38)
Location type
Promoter
Fragile sites / regions
FRA19B
Target gene
HMG20B
Nearest miRNA
hsa-mir-1227/Upstream/936851; hsa-let-7e/Downstream/393770;
Nearest TSS
ENST00000633603/Upstream/9629; ENST00000585741/Downstream/5133;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/9349, chr19-CpG: 167/Downstream/4903
Upstream sequence
ggccAGGACCTCACtttatttatttatttatttttttgagacaaagtctcgccatgtcgcccaggctggagtgtagtggctcgatcttgactcactgaaa
Downstream sequence
cctctgcctcccaggttcaagcaattcttgtgccgcagcttcctgagtagctggagctacaggtgtgcaccaccatgcgtggctactttttgtattttta
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate