hsa-mir-4761-5p _LIHC.png
FREM1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002779
Fusion event
HBV-FREM1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
14900981/14900983 (Hg38)
End
14900981/14900983 (Hg38)
Location type
Intronic
Target gene
FREM1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-384 ; hsa-mir-7975 ; hsa-mir-5571-3p ; hsa-mir-138-1-3p ; hsa-mir-186-3p ; hsa-mir-1283 ; hsa-mir-142-3p ; hsa-mir-3529-3p ; hsa-mir-3591-5p ; hsa-mir-3618 ; hsa-mir-4678 ; hsa-mir-4761-5p ; hsa-mir-934
Nearest miRNA
hsa-mir-101-2/Upstream/8893079; hsa-let-7a-1/Downstream/3672323;
Nearest TSS
ENST00000422679/Upstream/108099; ENST00000461041/Downstream/9447;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/207405, chr9-CpG: 41/Downstream/77113
Upstream sequence
gcagctccgccctcgcggtgctctgcggctctgtgctgacgagaacgcaactcccccggcgcaggcgcagagaggcgcgccgcgccggcgcaggcgcaga
Downstream sequence
AACATAAAGTTTAGCTACTAAAATTTTGTGCTACCACTAATTTCTGTTGCATTTTAACTTTGTTCCTTGCTGCGACTCTTTAAAGACAAAGATAAGTCta
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate