hsa-mir-4659a-3p _LIHC.png
OSCP1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002782
Fusion event
HBV-OSCP1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
GRCh37/hg19
Start
36901722/36436121 (Hg38)
End
36901722/36436121 (Hg38)
Location type
Intronic
Target gene
OSCP1
miRNAs that regulate target gene
hsa-mir-638 ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-33b-5p ; hsa-mir-33a-5p ; hsa-mir-199a-5p
Nearest miRNA
hsa-mir-12136/Upstream/1766427; hsa-mir-101-1/Downstream/725442;
Nearest TSS
ENST00000473358/Upstream/12650; ENST00000641463/Downstream/2879;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/38119, chr1-CpG: 46/Downstream/14074
Nearest cancer related gene
OSCP1(TSG, No orient, 0)
Upstream sequence
AATAAGTGAGTGCTGACTCTGCAAGTCTAACTCCCACCATCAGTCATCATGATTTTTAAAATTTTTCTTTCTCTCTCTCTCTAttttttttttttttttt
Downstream sequence
gagatggagtcttgctctgtcccccaggctggagtgcagtggcgtgatctcagctcactgcaagctccgcctcccaggttcacgccattctcctgcctca
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate