Basic Information
VIS ID
TVIS10002785
Fusion event
HBV-chr11 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr11
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
68791582/69024114 (Hg38)
End
68791582/69024114 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA11H ; FRA11A
Nearest miRNA
hsa-mir-10392/Upstream/979157; hsa-let-7a-2/Downstream/59062;
Nearest TSS
ENST00000527297/Upstream/10705; ENST00000534832/Downstream/24783;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/12731, chr11-CpG: 61/Downstream/24759
Nearby gene
MRGPRF(-10732) ; TPCN2(+24768) ;
Upstream sequence
ttctcatttgtttctatttttttctttttttttttttgagacagagtcttgccctatcgcccaggctggagtgcagtggtacaacgatggctcattgcaa
Downstream sequence
cctctgcctcccaggttcaagcaattcttgtgcctcagcctcctgagtagctgggactacaggcatgcaccatcatgcctggctaatttttgtattttta
Target sequence
CAGCCCAGGTGCCACACCCTTGGCCATCAGGTGAGGAATGCAGAGGAGAGGGCCACCGGCCTCCTCCTTCCAGTGCAGACTAAACCCACAGCCAGCCTCTCTGCGGGATGTCCATAAGTGCACAGCATCGGTGAGACAGGGGCTGACACGGCCCAGCTCCGGCGCCCAGCCTTCGAGGGCCGGGCCCTGTGGCTGTGCAATGCGATGGCTTTCTGAGCTCTGTTTTCTGTCAACTGGATGTTGTTGTAAACAAAA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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