hsa-mir-329-5p _LIHC.png
TBC1D5 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002806
Fusion event
HBV-TBC1D5 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
17607571/17566079 (Hg38)
End
17607571/17566079 (Hg38)
Location type
Intronic
Target gene
TBC1D5
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-493-5p ; hsa-mir-4446-5p ; hsa-mir-3679-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-655-5p ; hsa-mir-361-3p ; hsa-mir-329-5p ; hsa-mir-6779-3p
Nearest miRNA
hsa-mir-12127/Upstream/632819; hsa-let-7g/Downstream/1748769;
Nearest TSS
ENST00000440867/Upstream/159359; ENST00000449613/Downstream/57834;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/680729, chr3-CpG: 58/Downstream/176491
Upstream sequence
ctgtgaagaaagtcattggtagcttaatggggatggcattgaatctataaattaccttgggtagtatggccattttcatgatactgattcttcctatccg
Downstream sequence
AATCAAACAGTTTTAAAGACACTGTAATATATAGTGATAAAAATCTCAATTCTGTAACATAGATAAGCTTAAGTGCTTAATATATTCAGTTATGTGAGCA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate