GRIP1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002815
Fusion event
HBV-GRIP1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr12
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
67426565/67032785 (Hg38)
End
67426565/67032785 (Hg38)
Location type
Intronic
Target gene
GRIP1
Nearest miRNA
hsa-let-7i/Upstream/781628; hsa-mir-1178/Downstream/2240372;
Nearest TSS
ENST00000382841/Upstream/228599; ENST00000539109/Downstream/36377;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/797161, chr12-CpG: 105/Downstream/36105
Nearby gene
GRIP1(-353640) ; CAND1(+236496) ;
Upstream sequence
tgtctctagacattaccaaatataccttgggggtgcaagatgttggggagttgcctctggttgaaaagcacAGATCTCAATCAGAACTGTCACATCAAAA
Downstream sequence
TATAATGAAAGGTTCAaatggaagcaacacgtataatcttaaatatttcaggagctacattaaaaagataacaagaagcagattagttttaatattttat
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate