hsa-mir-497-3p _LIHC.png
COG5 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002833
Fusion event
HBV-COG5 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
106917740/107277295 (Hg38)
End
106917740/107277295 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA7F
Target gene
COG5
miRNAs that regulate target gene
hsa-mir-98-5p ; hsa-mir-320a ; hsa-mir-3978 ; hsa-mir-4261 ; hsa-mir-222-3p ; hsa-mir-221-3p ; hsa-mir-610 ; hsa-mir-181a-2-3p ; hsa-mir-497-3p
Nearest miRNA
hsa-mir-10525/Upstream/4805764; hsa-mir-10399/Downstream/7376050;
Nearest TSS
ENST00000635602/Upstream/18675; ENST00000473300/Downstream/192723;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/107411, chr7-CpG: 59/Downstream/286374
Upstream sequence
TGATATTTCTTCTGCTATTCTCTTGCTCATTCTATCACTTGCCTAATCATTTTAACAAATTCTGTTCACCTTTATGGTCCAATAAAACATGATTACTCTA
Downstream sequence
gtgaacatgggagagaatacagtcgtgggttcttagtttctgtttctggttaggccagtaaagccccttactcattatacgtttctgcttagcactagag
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate