Basic Information
VIS ID
TVIS10002837
Fusion event
HBV-ANKRD20A4-ANKRD20A20P integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
q13
Reference genome
GRCh37/hg19
Start
69467407/64454989 (Hg38)
End
69467407/64454989 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA9F
Target gene
ANKRD20A4-ANKRD20A20P
Nearest miRNA
hsa-mir-101-2/Upstream/23221154; hsa-let-7a-1/Downstream/6354986;
Nearest TSS
ENST00000422679/Upstream/85394; ENST00000464913/Downstream/310546;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/84999, chr9-CpG: 31/Downstream/33561
Nearby gene
ANKRD20A4(-42298) ; LOC100133920(+183954) ;
Upstream sequence
tcaagatgaaaattttatagatgctttataaaattttggaaaataaatttaatagtctgcatgctgcttttattagggcttattgtttgcaaaattaaat
Downstream sequence
aaccctctactagggcaatgcacctgtggctttgcagggtttagcccctgccgcagctctcatgggctgggctggtgttgagtgcctgtagcttttccac
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate