Basic Information
VIS ID
TVIS10002844
Fusion event
HBV-chr8 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
57275943/56363384 (Hg38)
End
57275943/56363384 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/13467109; hsa-mir-10400/Downstream/5351404;
Nearest TSS
ENST00000518652/Upstream/42608; ENST00000522511/Downstream/75126;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/43148, chr8-CpG: 138/Downstream/82183
Nearby gene
SDR16C5(-42702) ; SDR16C6P(+11334) ;
Upstream sequence
ctctattcaataaatgttgctggaaaaactggtaagccatatgcagaagaatgaagctggaaccctatctccaatcatataaaaaattaactcaaaatgg
Downstream sequence
ctctgtgcaatctttagagagctctgtataatctttagaaagctctttatttcaggcccaaggcccagtgggccaagagtttccccatagctatatcata
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate