Basic Information
VIS ID
TVIS10002855
Fusion event
HBV-chr9 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
p23
Reference genome
GRCh37/hg19
Start
11214540/11214540 (Hg38)
End
11214540/11214540 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/5206636; hsa-let-7a-1/Downstream/7358766;
Nearest TSS
ENST00000422679/Upstream/266059; ENST00000473763/Downstream/61774;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/601207, chr9-CpG: 37/Downstream/403724
Nearby gene
PTPRD(-601817) ; TYRP1(+1478846) ;
Nearest cancer related gene
PTPRD(TSG, -601817) ; TYRP1(OG, +1478846) ;
Upstream sequence
cctatctccaatataaggtcatattctgaggtaatgggggttaagactgcaacatatcaattttggtagacacaatttaacacctaacaTGTGGCTAGCA
Downstream sequence
ccaactggtgtgagatggtatctcattgtgattttgatttgcatttctctgatggccagtgatgatgagcatttttttcatgtgtcttttggctgcataa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate