Basic Information
VIS ID
TVIS10002860
Fusion event
HBV-LINC00618 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr14
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
97405605/96939268 (Hg38)
End
97405605/96939268 (Hg38)
Location type
Promoter
Target gene
LINC00618
Nearest miRNA
hsa-mir-1260a/Upstream/1801282; hsa-mir-1185-1/Downstream/3170151;
Nearest TSS
ENST00000550708/Upstream/61878; ENST00000557745/Downstream/177087;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/141366, chr14-CpG: 54/Downstream/94000
Upstream sequence
ATGGGTCAGCAGATACTTATCATAAAATATAGGCATTTGATGGCTGACAGTGTGATTCCCGtgtccaccattaaagttccaatgtctagcacagcgcctg
Downstream sequence
gtgcatagcaggtgctctaatgacaatatGAGTGGCTAACATGCACTGAGTAATTACTTACAGCAAAGCAAAGTGCCCCAAATTAAAAATGAGTGGACAC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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