Basic Information
VIS ID
TVIS10002863
Fusion event
HBV-CFAP97 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr4
Cytoband
q35.1
Reference genome
GRCh37/hg19
Start
186120571/185199417 (Hg38)
End
186120571/185199417 (Hg38)
Location type
Intronic
Target gene
CFAP97
miRNAs that regulate target gene
hsa-mir-218-5p
Nearest miRNA
hsa-mir-12113/Upstream/260977;
Nearest TSS
ENST00000502981/Upstream/16898; ENST00000506896/Downstream/4548;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/55569, chr4-CpG: 110/Downstream/4094
Upstream sequence
ttccattccattccatcccattcgggttgattccattctattctcttcctttccattccattccattccgttccattccattcgggttgattctatacca
Downstream sequence
aagcactttcggaggccaaggcaggtggatcacctgaggtcaggagttccagaccagcctggccaacatggtgaaaccctgtctccactaaaaataacaa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate