Basic Information
VIS ID
TVIS10002866
Fusion event
HBV-POTEH integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr22
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
16291473/15686488 (Hg38)
End
16291473/15686488 (Hg38)
Location type
Promoter
Target gene
POTEH
Nearest miRNA
hsa-let-7a-3/Downstream/2077692;
Nearest TSS
ENST00000624155/Upstream/81606; ENST00000343518/Downstream/3538;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/83031, chr22-CpG: 70/Downstream/2726
Upstream sequence
ggtgcaatcttgtctaactgcagcctcaacctcccaggttcaagcaatcctcccacctcagccttctgagtagctgggactacaggggcgtgctaccatg
Downstream sequence
actggccaagttctgtatttttggtagagataaggggtctcaccatgttgcccaggctggtctcccactcccagtctcaagtgatcctcctgcctcaggc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate