VISDB Viral Integration Site DataBase

VIS ID

TVIS10002867

Fusion event

HBV-POTEM integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr14

Cytoband

q11.2

Reference genome

Start

End

20023768/19437847 (Hg38)

Location type

Promoter

Target gene

miRNAs that regulate target gene

hsa-mir-4322 ; hsa-mir-4296 ; hsa-mir-4265 ; hsa-mir-5006-5p ; hsa-mir-4715-3p ; hsa-mir-4417 ; hsa-mir-1227-3p ; hsa-mir-876-3p ; hsa-mir-323a-5p ; hsa-mir-4755-3p ; hsa-mir-488-5p ; hsa-mir-6841-5p ; hsa-mir-6775-5p ; hsa-mir-4665-5p ; hsa-mir-5010-5p ; hsa-mir-1275 ; hsa-mir-4525 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-625-5p ; hsa-mir-6825-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-3622b-5p ; hsa-mir-3616-3p ; hsa-mir-4761-3p ; hsa-mir-556-5p ; hsa-mir-3674 ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-4660 ; hsa-mir-942-5p ; hsa-mir-136-5p ; hsa-mir-4716-5p ; hsa-mir-4289 ; hsa-mir-7161-3p ; hsa-mir-3154 ; hsa-let-7a-5p ; hsa-let-7b-5p ; hsa-let-7c-5p ; hsa-let-7d-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-1185-5p ; hsa-mir-1287-5p ; hsa-mir-196a-5p ; hsa-mir-196b-5p ; hsa-mir-202-3p ; hsa-mir-223-3p ; hsa-mir-2277-3p ; hsa-mir-3138 ; hsa-mir-3151-3p ; hsa-mir-3194-5p ; hsa-mir-3202 ; hsa-mir-3605-5p ; hsa-mir-3679-5p ; hsa-mir-3692-5p ; hsa-mir-376a-3p ; hsa-mir-376b-3p ; hsa-mir-423-3p ; hsa-mir-4277 ; hsa-mir-4327 ; hsa-mir-433-3p ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-mir-4520-3p ; hsa-mir-4533 ; hsa-mir-4686 ; hsa-mir-4704-3p ; hsa-mir-4710 ; hsa-mir-4802-3p ; hsa-mir-584-3p ; hsa-mir-598-5p ; hsa-mir-601 ; hsa-mir-6071 ; hsa-mir-628-5p ; hsa-mir-640 ; hsa-mir-645 ; hsa-mir-6795-3p ; hsa-mir-6826-3p ; hsa-mir-6887-3p ; hsa-mir-7154-5p ; hsa-mir-8075 ; hsa-mir-8078 ; hsa-mir-93-3p ; hsa-mir-942-3p ; hsa-mir-98-5p ; hsa-mir-1237-3p ; hsa-mir-1248 ; hsa-mir-1273h-5p ; hsa-mir-134-3p ; hsa-mir-1914-5p ; hsa-mir-20a-3p ; hsa-mir-30b-3p ; hsa-mir-324-5p ; hsa-mir-3651 ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-4436b-3p ; hsa-mir-449b-3p ; hsa-mir-4632-5p ; hsa-mir-4685-5p ; hsa-mir-4793-5p ; hsa-mir-544a ; hsa-mir-625-3p ; hsa-mir-6735-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6799-5p ; hsa-mir-6837-5p ; hsa-mir-6868-3p ; hsa-mir-6879-5p ; hsa-mir-7106-5p ; hsa-mir-7641 ; hsa-mir-765 ; hsa-mir-7843-5p ; hsa-mir-885-3p

Nearest miRNA

hsa-mir-1185-1/Downstream/1585467;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/2726, chr14-CpG: 34/Downstream/200803

Upstream sequence

ggtgcaatcttgtctaactgcagcctcaacctcccaggttcaagcaatcctcccacctcagccttctgagtggctgggactacaggggcgtgctaccatg

Downstream sequence

actggccaagttctgtatttttggtagagataaggggtctcaccatgttgcccaggctggtctcccactcccagtctcaagtgatcctcctgcctcaggc