VISDB Viral Integration Site DataBase

VIS ID

TVIS10002873

Fusion event

HBV-SRCAP integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr16

Cytoband

p11.2

Reference genome

Start

End

30714792/30703471 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1229-3p ; hsa-mir-877-3p ; hsa-mir-744-5p ; hsa-mir-130b-5p ; hsa-mir-296-3p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-320a ; hsa-mir-194-5p ; hsa-mir-27b-3p ; hsa-mir-197-3p ; hsa-mir-17-3p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-mir-450a-2-3p ; hsa-mir-6857-5p ; hsa-mir-6763-5p ; hsa-mir-3150a-3p ; hsa-mir-2110 ; hsa-mir-6810-5p ; hsa-mir-6825-5p ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-3175 ; hsa-mir-7106-5p ; hsa-mir-765 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-3188 ; hsa-mir-4784 ; hsa-mir-3150b-3p ; hsa-mir-4259 ; hsa-mir-6758-5p ; hsa-mir-6856-5p ; hsa-mir-4311 ; hsa-mir-539-3p ; hsa-mir-485-3p ; hsa-mir-3941 ; hsa-mir-93-3p ; hsa-mir-6893-3p ; hsa-mir-370-3p ; hsa-mir-3620-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-3671 ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-6849-3p ; hsa-mir-6877-3p ; hsa-mir-6819-3p ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-3140-3p ; hsa-mir-4645-3p ; hsa-mir-6832-3p ; hsa-mir-6752-3p ; hsa-mir-2114-5p ; hsa-mir-378a-5p ; hsa-mir-6778-3p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-18a-3p ; hsa-mir-324-3p ; hsa-mir-1913 ; hsa-mir-3653-5p ; hsa-mir-150-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-1224-3p ; hsa-mir-186-3p ; hsa-mir-6513-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-8079 ; hsa-mir-1245a ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-6515-5p ; hsa-mir-2113 ; hsa-mir-9-3p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-3135b ; hsa-mir-2467-3p ; hsa-mir-3616-3p ; hsa-mir-7843-5p ; hsa-mir-6879-5p ; hsa-mir-6735-5p ; hsa-mir-4632-5p ; hsa-mir-4436b-3p ; hsa-mir-320e ; hsa-mir-6776-3p ; hsa-mir-4429 ; hsa-mir-320d ; hsa-mir-320c ; hsa-mir-320b ; hsa-mir-1251-3p ; hsa-mir-129-5p ; hsa-mir-3672 ; hsa-mir-431-5p ; hsa-mir-4524a-3p ; hsa-mir-4797-5p ; hsa-mir-5007-5p ; hsa-mir-6864-3p ; hsa-mir-8055 ; hsa-mir-924

Nearest miRNA

hsa-mir-1225/Upstream/199470; hsa-mir-11401/Downstream/171795;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/4382, chr16-CpG: 76/Downstream/44611

Upstream sequence

tcagtagagacggggtttcaccatgttggccaggttggtctcaaactcctgacctcaggtgatccacccaccttagcctcccaaagtgctgggatcacaa

Downstream sequence

gcatgagccaccacccccggcctatatatatatatatttttaaGTTTGGGAACTGTGTAAATGTCAGGACATAATTCTTGCATGTCAAGCATCTATAAAC