Basic Information
VIS ID
TVIS10002880
Fusion event
HBV-chr11 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr11
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
69035539/69268072 (Hg38)
End
69035539/69268072 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA11H ; FRA11A
Nearest miRNA
hsa-mir-10392/Upstream/184814; hsa-let-7a-2/Downstream/1015883;
Nearest TSS
ENST00000527297/Upstream/96508; ENST00000540760/Downstream/26066;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/110583, chr11-CpG: 26/Downstream/108987
Nearby gene
PRPF31(-96509) ; MYEOV(+26083) ;
Upstream sequence
TTTTTGGGTACCTCGGGAACTTCCCCTCCAGGTTGCAAGCTGTAGGCTCTGCTAGTCTGTGGGGACTGCACCCTGTCTCCAGAACCCCAGGAGGGGCTGT
Downstream sequence
GTTTGGCCCTCATACATCTTTGCTGGTGGCATTGTGGGCTTTGGTGCCATATAACCCCAGAGAGGCTGTGCCCACCAGGCAAGGAAGGCACCTTTATCCG
Target sequence
tgacatctttgttgaaaatcagttgcttataaatgtgtggatttatatctgtgttctatattctgttccactactctatgtctgtttttatggcagtatcatgctgttttgattaccatagcttaatatagtatattttgaagtcatgtagtgtaatgtctccagctttcttcttttggctaaagattgctttggctattcaggataatttatggttccatttagaacttttagagttgttttttctatctgtaa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate