Basic Information
VIS ID
TVIS10002886
Fusion event
HBV-chr11 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr11
Cytoband
q13.4
Reference genome
GRCh37/hg19
Start
71571421/71860375 (Hg38)
End
71571421/71860375 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA11H
Nearest miRNA
hsa-mir-10392/Upstream/386807; hsa-let-7a-2/Downstream/211853;
Nearest TSS
ENST00000527297/Upstream/25663; ENST00000530210/Downstream/18078;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/46568, chr11-CpG: 51/Downstream/219964
Nearby gene
DEFB108B(-22813) ; LOC100133315(+5134) ;
Upstream sequence
GTGCATATTGAGATGTTCTTGGACACATTATGAAGTGGGACTCAGAACACTCAGGTCGAAAAATAGGATTTTCATTATCAGTTTTGTATGGTCTCTTAGT
Downstream sequence
ACTAAATAGTTAATTGCTGAGCTGTCTATACAATTTAATAATACTGCACTCCAAAAATTCTGATCTTAATCTCTGCTGTGACTGCCGGGCATGTAGAATT
Target sequence
tatatttttttttttttttttttttttttttttttttttttttttttttttt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate