DMRT1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002896
Fusion event
HBV-DMRT1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
874889/874889 (Hg38)
End
874889/874889 (Hg38)
Location type
Intronic
Target gene
DMRT1
Nearest miRNA
hsa-mir-1302-9/Upstream/844608; hsa-let-7a-1/Downstream/3975408;
Nearest TSS
ENST00000422679/Upstream/32175; ENST00000417254/Downstream/102075;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/31525, chr9-CpG: 98/Downstream/94708
Upstream sequence
atgggggttaagactgcaacatatcaattttggtagacacaatttaacacctaacaTGTGGCTAGCAGCTATCATCTCAACATCTCAACAACTTACCTAA
Downstream sequence
ctccacctcccgggttcatgccattctcttgcctcagcctcttgagtagctgggactacgggtgcccgccaccacgcccggcaaattttttgtatttttt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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