VIPR2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002903
Fusion event
HBV-VIPR2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
q36.3
Reference genome
GRCh37/hg19
Start
158924325/159131634 (Hg38)
End
158924325/159131634 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA7I
Target gene
VIPR2
Nearest miRNA
hsa-mir-10399/Upstream/539938;
Nearest TSS
ENST00000635602/Upstream/34430; ENST00000421760/Downstream/13218;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/18788, chr7-CpG: 208/Downstream/12181
Upstream sequence
AGGAAAAATTAAggccaggcgcagtggctcacacctgtatttccaacactttgggaggctgaggtgggtggatcacttgaggtcaggagttcgagaccag
Downstream sequence
caggtgtgtctgtgactcacattttttctgaatctgctgtaagactggcttaataaacctcttgaaaccttcattgaaatccatgcctaagtcactgatt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate