Basic Information
VIS ID
TVIS10002908
Fusion event
HBV-SKINT1L integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
p33
Reference genome
GRCh37/hg19
Start
48616839/48151167 (Hg38)
End
48616839/48151167 (Hg38)
Location type
ncRNA_intronic
Target gene
SKINT1L
Nearest miRNA
hsa-mir-12136/Upstream/3605615; hsa-mir-101-1/Downstream/2908670;
Nearest TSS
ENST00000473358/Upstream/68971; ENST00000431986/Downstream/21805;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/153238, chr1-CpG: 67/Downstream/320465
Upstream sequence
aaaacgcagagtgcctctcctcctccaaaggaacacagttcctcaccagcaacggaacaaagctggatggagaatgactttgacgagctgacagaagaag
Downstream sequence
gtttcagacgatcaaattactctgagctatgggaggacattcaaaccaaaggcaaagaagttgaaaactttgaaaaaaatttagaagaatgtataactac
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate