Basic Information
VIS ID
TVIS10002909
Fusion event
HBV-LOC105369165 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
p16.2
Reference genome
GRCh37/hg19
Start
53014149/52787011 (Hg38)
End
53014149/52787011 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LOC105369165
Nearest miRNA
hsa-mir-1301/Upstream/84396; hsa-mir-10b/Downstream/1062111;
Nearest TSS
ENST00000437798/Upstream/286259; ENST00000418451/Downstream/77224;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/157025, chr2-CpG: 28/Downstream/980743
Nearby gene
NRXN1(-1754475) ; ASB3(+882968) ;
Upstream sequence
gtagttacttctgagtactgcttaaaaatctttgcctactcccaagtcatatataaataaatatatataaatatatatttatatatatatttatatatat
Downstream sequence
aaaaatatatatttgttgttgttgttgttcaatgacctttagagtttagcttttaagtttaggtctacgatacatatcaaatgaatttttctatatggga
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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