TBXAS1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002930
Fusion event
HBV-TBXAS1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
q34
Reference genome
GRCh37/hg19
Start
139546409/139846610 (Hg38)
End
139546409/139846610 (Hg38)
Location type
Intronic
Target gene
TBXAS1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-34b-3p
Nearest miRNA
hsa-mir-10399/Upstream/802453; hsa-mir-11400/Downstream/2627917;
Nearest TSS
ENST00000635602/Upstream/17308; ENST00000494876/Downstream/106825;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/67913, chr7-CpG: 18/Downstream/104065
Upstream sequence
ATAAAAAATACTACATCTATTCACCAAAAAGTAAAAATTAATAGGAAAATGAGTTTAAAATCATTGAGTAATATTTTATGTATTGCTTATGGAACCTTAG
Downstream sequence
TAGTTATTTTGTAAACCTCATTCTGAATTCTCACCTGATCCCCAGGAATGCACTGCAGTGAAAAGTGAGGAGAGGCGTACTTCAAACAAGTGACCTCATT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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