Basic Information
VIS ID
TVIS10002943
Fusion event
HBV-MIR548AX integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr4
Cytoband
p15.32
Reference genome
GRCh37/hg19
Start
16622379/16620756 (Hg38)
End
16622379/16620756 (Hg38)
Location type
ncRNA_intronic
Fragile sites / regions
FRA4D
Target gene
MIR548AX
Nearest miRNA
hsa-mir-12113/Upstream/2992799; hsa-mir-12115/Downstream/3907519;
Nearest TSS
ENST00000502981/Upstream/24881; ENST00000511148/Downstream/6237;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/259613, chr4-CpG: 79/Downstream/890930
Upstream sequence
ggaatgcaatggaatggaaaaatccgagtggaatggaacagaattgaatggtataaccggagaggaatggaatggaatggagtggaatggaatagaatgg
Downstream sequence
gggagcctctgtcctataggctgaccaagtgctggtgactgggtgggtaagtctacttgttcctgtacttgatagtataaaagttatttgcctgaagaca
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate