VISDB Viral Integration Site DataBase

VIS ID

TVIS10002978

Fusion event

HBV-SAR1A integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr10

Cytoband

q22.1

Reference genome

Start

End

71928852/70169096 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-mir-615-3p ; hsa-mir-149-5p ; hsa-mir-5003-3p ; hsa-mir-6868-5p ; hsa-mir-548l ; hsa-mir-548n ; hsa-mir-4279 ; hsa-mir-222-5p ; hsa-mir-365a-5p ; hsa-mir-365b-5p ; hsa-mir-3199 ; hsa-mir-1343-3p ; hsa-mir-6783-3p ; hsa-mir-8052 ; hsa-mir-3679-3p ; hsa-mir-2355-5p ; hsa-mir-548au-3p ; hsa-mir-3160-5p ; hsa-mir-8073 ; hsa-mir-221-5p ; hsa-mir-4286 ; hsa-mir-125b-2-3p ; hsa-mir-1278 ; hsa-mir-7851-3p ; hsa-mir-619-3p ; hsa-mir-6882-5p ; hsa-mir-449b-5p ; hsa-mir-449a ; hsa-mir-34c-5p ; hsa-mir-34a-5p ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-4315 ; hsa-mir-34b-3p ; hsa-mir-3121-3p ; hsa-mir-7641 ; hsa-mir-4795-3p ; hsa-mir-4650-3p ; hsa-mir-3132 ; hsa-mir-197-5p ; hsa-mir-6755-5p ; hsa-mir-5694 ; hsa-mir-3156-5p ; hsa-mir-513b-5p ; hsa-mir-539-5p ; hsa-mir-570-3p ; hsa-mir-3976 ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-548ad-3p ; hsa-mir-18a-5p ; hsa-mir-18b-5p ; hsa-mir-4735-3p ; hsa-mir-129-5p ; hsa-mir-8055 ; hsa-mir-610 ; hsa-mir-6778-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-26a-2-3p ; hsa-mir-26a-1-3p ; hsa-mir-335-3p ; hsa-mir-6749-3p ; hsa-mir-452-3p ; hsa-mir-3927-5p ; hsa-mir-5196-3p ; hsa-mir-641 ; hsa-mir-3617-5p ; hsa-mir-7161-5p ; hsa-mir-548u ; hsa-mir-150-5p ; hsa-mir-665 ; hsa-mir-887-5p ; hsa-mir-7152-5p ; hsa-mir-3074-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-1200 ; hsa-mir-378a-5p ; hsa-mir-4425 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-7160-5p ; hsa-mir-202-3p ; hsa-mir-98-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-7162-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-6888-5p ; hsa-mir-5698 ; hsa-mir-143-5p ; hsa-mir-6879-3p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-4634 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-5693 ; hsa-mir-500b-3p ; hsa-mir-6871-5p ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-1281 ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-660-3p

Nearest miRNA

hsa-mir-1265/Upstream/2765686; hsa-mir-107/Downstream/1621651;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/22177, chr10-CpG: 60/Downstream/1155

Upstream sequence

AGGATTTGTACCAACTCATCAGTAGTTTTACAATCTGCACAGtacttgtacatctcatttcatccccacaccaaccctaccaggcaaggatcactggcct

Downstream sequence

catttaacaagataaagatgaggatactcctagttttgctgagtcctttaagacggctcagttgaaaaagtaatagtgccagggcttaaaccctcatctc