Basic Information
VIS ID
TVIS10002980
Fusion event
HBV-LINC02131 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr16
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
77627318/77593421 (Hg38)
End
77627318/77593421 (Hg38)
Location type
Intronic
Target gene
LINC02131
Nearest miRNA
hsa-mir-1225/Upstream/724402; hsa-mir-11401/Downstream/3791597;
Nearest TSS
ENST00000527434/Upstream/2615; ENST00000568787/Downstream/129071;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/158244, chr16-CpG: 24/Downstream/129098
Nearby gene
ADAMTS18(-158307) ; NUDT7(+129071) ;
Upstream sequence
ATACAGAAGAAAAATGTGTTTATATCAAAGTACACTATATTCCAAGTATCAAATGTAAGATGGTGACAATAACTGAAGTGAAAATTGAAAGAGGGGAGAG
Downstream sequence
GTTGCCTGATTCCTGAATAGCTGTCAAGGAGGAGAGGAGACTCTACCTTGGTTTATGGATGGGTCCAATATGGACATACAGAAAAGTAGGTCAAGAAGAG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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