VISDB Viral Integration Site DataBase

VIS ID

TVIS10002989

Fusion event

HBV-OSTM1 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr6

Cytoband

q21

Reference genome

Start

End

108371620/108050416 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-140-5p ; hsa-mir-374b-5p ; hsa-mir-106b-5p ; hsa-mir-125a-5p ; hsa-mir-26b-5p ; hsa-let-7b-5p ; hsa-mir-6083 ; hsa-mir-155-5p ; hsa-mir-5579-3p ; hsa-mir-6882-3p ; hsa-mir-208b-5p ; hsa-mir-208a-5p ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-93-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-526b-3p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-106a-5p ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-520e ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-520b ; hsa-mir-302e ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-520f-3p ; hsa-mir-6818-3p ; hsa-mir-6873-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-6798-3p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-942-5p ; hsa-mir-1236-3p ; hsa-mir-6515-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-5695 ; hsa-mir-519d-5p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-6748-3p ; hsa-mir-660-3p ; hsa-mir-4667-3p ; hsa-mir-6887-3p ; hsa-mir-5195-5p ; hsa-mir-106a-3p ; hsa-mir-138-1-3p ; hsa-mir-200b-3p ; hsa-mir-200c-3p ; hsa-mir-217 ; hsa-mir-328-5p ; hsa-mir-369-3p ; hsa-mir-410-3p ; hsa-mir-429 ; hsa-mir-4418 ; hsa-mir-509-3-5p ; hsa-mir-509-5p ; hsa-mir-6795-5p ; hsa-mir-6807-3p ; hsa-mir-6835-5p ; hsa-mir-6881-5p ; hsa-mir-6885-5p ; hsa-mir-6887-5p ; hsa-mir-7109-5p ; hsa-mir-8084 ; hsa-mir-129-5p ; hsa-mir-149-5p ; hsa-mir-3064-5p ; hsa-mir-3672 ; hsa-mir-4524a-3p ; hsa-mir-4794 ; hsa-mir-624-3p ; hsa-mir-6504-5p ; hsa-mir-664a-5p ; hsa-mir-6822-3p ; hsa-mir-6864-3p ; hsa-mir-760 ; hsa-mir-8055 ; hsa-mir-8057

Nearest miRNA

hsa-mir-10398/Upstream/1266196; hsa-mir-1202/Downstream/11018631;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/91916, chr6-CpG: 97/Downstream/23812

Upstream sequence

CAACATTTTCTTGGGAAAGCAAGATGAGTGGCTTTGCAATGATTAATTCTTCACGAGAGAGAGAGGGGAAGTTGTGACTTGCTGTGTATGTGTGTGCACA

Downstream sequence

gcactggcacgatctcagctcactgcaacctctccctcccggtttcaagcgattctcctgcctcagcctcctgaatagctgggataacaggcgtgtgcca