IGFN1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002998
Fusion event
HBV-IGFN1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
201182487/201213359 (Hg38)
End
201182487/201213359 (Hg38)
Location type
Exonic
Target gene
IGFN1
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-mir-101-1/Upstream/2354206; hsa-mir-1182/Downstream/506149;
Nearest TSS
ENST00000473358/Upstream/263; ENST00000475988/Downstream/9764;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/41983, chr1-CpG: 17/Downstream/13543
Upstream sequence
GGGTCCTGGGGCCCTAAAGGAGGATGAAGGGCAGGGAGTGGAAGAGGCTGGGAGGTCAGGCAGGAGGCCTGGCTCACTCAGGAGCAGGTCTCAGGCACAG
Downstream sequence
TCAGGGGCTGAGGTTGGAGGAGGAAAGAGAAGGGGAGCAGACGAGGCTGGAAGCATGGGGTGGCAGCCTATGGGAGAGAACTGGGGGTGCCTGGAGGAGA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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