Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10002999
Fusion event
HBV-DIRC3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
q35
Reference genome
End
218465364/217600641 (Hg38)
Location type
ncRNA_exonic
Target gene
Nearest miRNA
hsa-mir-10b/Upstream/3842482; hsa-mir-1244-1/Downstream/299872;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/790150, chr2-CpG: 23/Downstream/155915
Upstream sequence
GAAGTCCTCTGGCCACCTGAGTTGTCCATCTGTGTAGTGAAGGGTCAGAAAAAACTTGCAATGCAGAGGCAACCCTCAGGGAAGAAAGTATCCTTGGTCT
Downstream sequence
TTGGGGTGGAGACAGAAGAAACCCACCTTTCTTCCCCCTATTTCTTTGCACTATGCTCCACAGCAGAAGATAACATTACAAACTTCCCAAGTAGAACAAA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.