Basic Information
VIS ID
TVIS10003013
Fusion event
HBV-LINC00922 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr16
Cytoband
q21
Reference genome
GRCh37/hg19
Start
65535282/65501379 (Hg38)
End
65535282/65501379 (Hg38)
Location type
ncRNA_intronic
Target gene
LINC00922
Nearest miRNA
hsa-mir-1225/Upstream/7729027; hsa-mir-11401/Downstream/1700942;
Nearest TSS
ENST00000527434/Upstream/266465; ENST00000563811/Downstream/70410;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/377618, chr16-CpG: 40/Downstream/769003
Upstream sequence
CACGCATAGGTTAATGAAATCCACTGAATGAATAAACCATTCCTGGTACTCACTGTGAGAAGCTCTGCCTATAGTCTATTAAGTGAGCCTCTCATCTCTC
Downstream sequence
TCCCGTGTAGAAGAGACTTCCCTATGTAACATGTGGGTGTATTTCTGTCAGGGAGCCTCTTATTCTGCATATAAGGAGATCAGTACTCTGTTCCCCTCTC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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