Basic Information
VIS ID
TVIS10003018
Fusion event
HBV-chr9 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
q13
Reference genome
GRCh37/hg19
Start
69934995/64922577 (Hg38)
End
69934995/64922577 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA9F
Nearest miRNA
hsa-mir-101-2/Upstream/23688742; hsa-let-7a-1/Downstream/5887398;
Nearest TSS
ENST00000422679/Upstream/157042; ENST00000464913/Downstream/328249;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/147275, chr9-CpG: 111/Downstream/273351
Nearby gene
LOC100133920(-270046) ; FOXD4L5(+240712) ;
Upstream sequence
ttcatgtttcttaaccatttggattagctcttcaactgaggttagaatcctttgtgtatatttttctatccccccagaattttattttgaaacattttaa
Downstream sequence
AGAGAACTTCTCATTCAAGGTGAGTGTGAAAAAATATTACAAAACATGTGGAGAATTAACTATTAGAGAGAAAATGAAATAATTATACAAAGAAACCTCC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate