NTM _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003020
Fusion event
HBV-NTM integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr11
Cytoband
q25
Reference genome
GRCh37/hg19
Start
131305313/131435419 (Hg38)
End
131305313/131435419 (Hg38)
Location type
Intronic
Target gene
NTM
miRNAs that regulate target gene
hsa-mir-182-5p ; hsa-mir-340-5p ; hsa-mir-501-5p ; hsa-mir-500b-5p ; hsa-mir-362-5p
Nearest miRNA
hsa-let-7a-2/Upstream/768616; hsa-mir-4697/Downstream/2463085;
Nearest TSS
ENST00000527297/Upstream/64790; ENST00000416661/Downstream/20044;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/518680, chr11-CpG: 16/Downstream/255043
Upstream sequence
tgtgaagaaagtcattgggagcttgatggggatggaattgaatctataaattaccttgggcagtatggccattttcacaatgttgattcttcctatccat
Downstream sequence
gagcatggaatgttcttccatttgtttgtgccctcttttatttcattgagcagtgatttgtagttctccttgaagaggtccctcacatcccttgtaagtt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate