Basic Information
VIS ID
TVIS10003052
Fusion event
HBV-chr7 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
53341438/53273745 (Hg38)
End
53341438/53273745 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1183/Upstream/8391945; hsa-mir-10399/Downstream/3682040;
Nearest TSS
ENST00000635602/Upstream/238103; ENST00000629899/Downstream/243371;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/54246, chr7-CpG: 48/Downstream/1268296
Nearby gene
POM121L12(-236820) ; LINC01446(+381764) ;
Upstream sequence
ccgcctcggcctcccaaagtgctgggattacaggcatgagccaccacgcctggccTCCCAGTGTCTTTTATGACTTCACTTCCTCGCCCTCTTCTCACCT
Downstream sequence
GTTTTATCACCCTTTAAAACACCTGAATTAAGATGTTTTTATCCCAACCACTGAAGAAAAGAACTACTTCAATGCATGATCCCTAAAAAGAAAAAAAAAA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate