Basic Information
VIS ID
TVIS10003082
Fusion event
HBV-chr20 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr20
Cytoband
q13.12
Reference genome
GRCh37/hg19
Start
43066110/44437470 (Hg38)
End
43066110/44437470 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/29267; hsa-mir-1-1/Downstream/988040;
Nearest TSS
ENST00000382410/Upstream/36169; ENST00000456317/Downstream/13078;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/110382, chr20-CpG: 37/Downstream/38296
Nearby gene
HNF4A(-4625) ; SREBF2-AS1(+11307) ;
Nearest cancer related gene
HNF4A(TSG, -4625) ;
Upstream sequence
CTTCCGGGGAAAAGGAAGCCACTAGAGGtttctgtttgttttttgagaggggttctcgctctgtcacccaggctggagtgcaatggcgcgatcttggctc
Downstream sequence
gctgcaatctctatctcccaggttctagcaagtctcctgcctcagcctcccaagtagctgagattacaggagcatgcaaccacacccagataatttttgt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate