Basic Information
VIS ID
TVIS10003089
Fusion event
HBV-FAM138C integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
35842/35842 (Hg38)
End
35842/35842 (Hg38)
Location type
ncRNA_exonic
Target gene
FAM138C
Nearest miRNA
hsa-mir-1302-9/Upstream/5561; hsa-let-7a-1/Downstream/4814455;
Nearest TSS
ENST00000422679/Upstream/6103; ENST00000620326/Downstream/18;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/6327, chr9-CpG: 102/Downstream/37118
Upstream sequence
ttagtctaataggtattcccttgtatatgccttgattcttttctcctgctgtctttaaatttttctctttgtttttggcttttgacaatttaactataat
Downstream sequence
AGCCCCGAAACCCCGTTGTGTGGGAGCTGGGCACAGGGCAGCAGGACTAATCCTTGGAACAGCTCAGGGAGGATTATCCCAGCCACTGTCAGCAGCGGTG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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