Basic Information
VIS ID
TVIS10003090
Fusion event
HBV-chr1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
p36.33
Reference genome
GRCh37/hg19
Start
36059/36059 (Hg38)
End
36059/36059 (Hg38)
Location type
ncRNA_exonic
Fragile sites / regions
FRA1A
Target gene
FAM138A ; FAM138F
Nearest miRNA
hsa-mir-1302-2/Upstream/5556; hsa-mir-101-1/Downstream/151832;
Nearest TSS
ENST00000473358/Upstream/5792; ENST00000335137/Downstream/14;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/6322, chr1-CpG: 30/Downstream/99065
Upstream sequence
CTCTGTAGGGTGAGAAAGGGAGGCTAAAGCCTGGTGCCCACTGCCCTGGCTGCTCCGCATTGCAGGAGCTGCGCCCTTCCTTTCCTGGCACAGGGTCCAC
Downstream sequence
AGCCCCGAAACCCCGTTGTGTGGGAGCTGGGCACAGGGCAGCAGGACTAATCCTTGGAACAGCTCAGGGAGGATTATCCCAGCCACTGTCAGCAGCGGTG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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