Basic Information
VIS ID
TVIS10003091
Fusion event
HBV-FAM138D integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr12
Cytoband
p13.33
Reference genome
GRCh37/hg19
Start
67630/38108 (Hg38)
End
67630/38108 (Hg38)
Location type
Intronic
Target gene
FAM138D
Nearest miRNA
hsa-let-7i/Downstream/1622207;
Nearest TSS
ENST00000546223/Upstream/6; ENST00000382841/Downstream/25;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/6449, chr12-CpG: 50/Downstream/28586
Nearby gene
WASH8P(+20354) ;
Upstream sequence
CCGCTGCTGACAGTGGCTGGGATAATCCTCCCTGAGCTGTTCCAAGGATTAGTCCTGCTGCCCTGTGCCCAGCTCCCACACAACGGGGTTTCGGGGCTGT
Downstream sequence
GGACCCTGTGCCAGGAAAGGAAGGGCGCAGCTCCTGCAATGCGGAGCAGCCAGGGCAGTGGGCACCAGGCTTTAGCCTCCCTTTCTCACCCTACAGAGGG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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