Basic Information
VIS ID
TVIS10003101
Fusion event
HBV-LINC00971 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
84833936/84784785 (Hg38)
End
84833936/84784785 (Hg38)
Location type
ncRNA_intronic
Target gene
LINC00971
Nearest miRNA
hsa-let-7g/Upstream/5276816; hsa-mir-12124/Downstream/600925;
Nearest TSS
ENST00000440867/Upstream/2798633; ENST00000488348/Downstream/84790;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1976692, chr3-CpG: 48/Downstream/174348
Upstream sequence
AAATCACTTCCATCGTAGATCACAGGCCGATCAACCGTCAAGTGATAAAATACCTTTTTAGAGACAAACCTGAGGAAACAGAAATGGAAAGGGAGGGTGT
Downstream sequence
tggcttgcagatagtcacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcttcacaaagcctttcctctgtagttggggagagggagatgt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate