Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003103
Fusion event
HBV-FAM138E integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr15
Cytoband
q26.3
Reference genome
End
102495111/101954908 (Hg38)
Location type
ncRNA_exonic
Target gene
Nearest miRNA
hsa-mir-10393/Upstream/3170406; hsa-mir-1302-10/Downstream/5551;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/190088, chr15-CpG: 116/Downstream/6243
Upstream sequence
CCGCTGCTGACAGTGGCTGGGATAATCCTCCCTGAGCTGTTCCAAGGATTAGTCCTGCTGCCCTGTGCCCAGCTCCCACACAACGGGGTTTCGGGGCTGT
Downstream sequence
GGACCCTGTGCCAGGAAAGGAAGGGCGCAGCTCCTGCAATGCGGAGCAGCCAGGGCAGTGGGCACCAGGCTTTAGCCTCCCTTTCTCACCCTACAGAGGG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.