Basic Information
VIS ID
TVIS10003109
Fusion event
HBV-LOC101927815 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
p23.2
Reference genome
GRCh37/hg19
Start
2411345/2554253 (Hg38)
End
2411345/2554253 (Hg38)
Location type
Intronic
Target gene
LOC101927815
Nearest miRNA
hsa-mir-3674/Upstream/477613; hsa-mir-10400/Downstream/4067871;
Nearest TSS
ENST00000518652/Upstream/24543; ENST00000520024/Downstream/69112;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/73069, chr8-CpG: 40/Downstream/7590
Nearby gene
MYOM2(-317965) ; CSMD1(+381530) ;
Upstream sequence
NNNNNNNNNNAAGctttgaggatttcgttggaaacgggaatatcttcaaataaaatctagccagacgcattctaagaaacatcttagggaggtttacatt
Downstream sequence
TTGAAGTATAATCCTTTGAGTTGTCAGTCTGTCTTACAATTTTTTATTTGGGGAATGTTTTGCAGGCTCCTGTTCCAATCTGAACCTTTGTTACATGCAG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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