Basic Information
VIS ID
TVIS10003116
Fusion event
HBV-chr19 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr19
Cytoband
p12
Reference genome
GRCh37/hg19
Start
23480439/23297637 (Hg38)
End
23480439/23297637 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10395/Upstream/2898283; hsa-let-7e/Downstream/11825063;
Nearest TSS
ENST00000633603/Upstream/23405; ENST00000600671/Downstream/12926;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/23571, chr19-CpG: 44/Downstream/173252
Nearby gene
IPO5P1(-23386) ; ZNF91(+60059) ;
Upstream sequence
tcaccatgttgctcacgctggtctcgaactcctgaccttgtgatctgcccacctcagcctcccaaagtgctgggattacaggcatgagccaccatgccct
Downstream sequence
gctctgatttctttgagtagtgttttatagttctccttgtagaggcctttcacttcctttgttagatgcattcctaggtgttttattctattcatggtga
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate