ETV2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003120
Fusion event
HBV-ETV2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr19
Cytoband
q13.12
Reference genome
GRCh37/hg19
Start
36135668/35644766 (Hg38)
End
36135668/35644766 (Hg38)
Location type
Exonic
Fragile sites / regions
FRA19A
Target gene
ETV2
Nearest miRNA
hsa-mir-10395/Upstream/299139; hsa-let-7e/Downstream/3764857;
Nearest TSS
ENST00000633603/Upstream/1100; ENST00000392201/Downstream/3457;
Nearest CpG islands
chr19-CpG: 128/Target, None/Upstream, None/Downstream
Upstream sequence
GGCGAGCGCAAGAGAAAGCCGGGCATGAATTACGAGAAGCTGAGCCGGGGCCTTCGCTACTACTATCGCCGCGACATCGTGCGCAAGAGCGGGGGGCGAA
Downstream sequence
AGTACACGTACCGCTTCGGGGGCCGCGTGCCCAGCCTAGCCTATCCGGACTGTGCGGGAGGCGGACGGGGAGCAGAGACACAATAAAAATTCCCGGTCAA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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