Basic Information
VIS ID
TVIS10003129
Fusion event
HBV-chr16 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr16
Cytoband
q12.2
Reference genome
GRCh37/hg19
Start
55295833/55261921 (Hg38)
End
55295833/55261921 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/4519544; hsa-mir-11401/Downstream/983599;
Nearest TSS
ENST00000527434/Upstream/323250; ENST00000558315/Downstream/60765;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/204886, chr16-CpG: 114/Downstream/61688
Nearby gene
IRX5(-327438) ; IRX6(+62638) ;
Upstream sequence
gtatataagtatgtatacatatatttatgtgcatgtgtatatatgtgtgtatgcaagtgtgtatatatgtacatatgtgcgtatatatctctaaGtgtgt
Downstream sequence
gtgtgtatatatacttatgtgtatgtgtatataggtgtgtgtatatatctaagtatgtatttatatatttatatgcatgtgtatttgtgtgtacaaatgt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate